PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056946-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 282aa    MW: 31008.5 Da    PI: 8.1053
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056946-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.6e-0817412348
                      -HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                      +W+tIa+ ++ gR+++ +k++w+++l
  PSME_00056946-RA 17 RWSTIASQLP-GRSDNKIKNFWNSHL 41
                      5*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.013145IPR017930Myb domain
SuperFamilySSF466891.47E-71246IPR009057Homeodomain-like
CDDcd001679.50E-51740No hitNo description
PfamPF002491.6E-51741IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-111742IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MIIKYFLQIR FYSCACRWST IASQLPGRSD NKIKNFWNSH LKKRLLKLGL DSSTHASKAE  60
GNPAASRVFK ALALTRHKAQ WENARLEAEA RLCRESLPSS SNSEAGYHIN NTVELTTPDD  120
NAPSDYFLKI WNSGTGKTFR NESSATTIID SCNNSFPAFD QNHPNGGGDD QVLSSQITKI  180
PRSGSGSVSS LPCVSTQLNC CGQYLNSNDK HKKNGSLQLQ CNSASYEWNG HCNVKISQTL  240
SGSDDMTMGE IEHKVPQAIS SSEELGSCTY ELHRLFGASG FP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-30myb domain protein 17